Basic Information
Locus ID:
Ftri13G26327
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 96036686 | 96037354 | - | Ftri13G26327 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 21,461.07 Da | 79.50 | 67.20 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 97 | 142 | 5.11157E-5 | - |
| Pfam | PF17123 | RING-like zinc finger | 97 | 126 | 1.5E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 148 | 1.39E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 146 | 3.7E-8 | IPR013083 |
| SMART | SM00184 | ring_2 | 97 | 141 | 2.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 97 | 142 | 11.191014 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 25 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49665.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021998514.1 | E3 ubiquitin-protein ligase WAV3 [Helianthus annuus] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251T515 | Putative zinc finger (C3HC4-type RING finger) family protein OS=Helianthus annuus OX=4232 GN=EDA40 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 3 | Ftri13G26327, Ftri3G03542, Ftri8G07275 |
| Brassicaceae | Brassica nigra | 1 | BniB05g046860.2N |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_044936, gene-QYE76_061876, gene-QYE76_070877 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG034800 |
| Solanaceae | Solanum chilense | 1 | SOLCI004069200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009889 |