halophFGD

Basic Information

Locus ID: Ftri13G25869

Species & Taxonomic ID: Flaveria trinervia & 4227

Genome Assembly: GCA_025506515.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr13	97661938	97664920	-	Ftri13G25869

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.61	77,467.79 Da	44.31	80.44	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	369	406	9.0E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	226	260	8.8E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	328	364	1.3E-6	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	222	673	2.85E-56	IPR036322
Gene3D	G3DSA:2.130.10.10	-	295	580	2.2E-43	IPR015943
Gene3D	G3DSA:2.130.10.10	-	111	294	1.1E-11	IPR015943
SMART	SM00320	WD40_4	457	497	59.0	IPR001680
SMART	SM00320	WD40_4	326	364	1.5E-9	IPR001680
SMART	SM00320	WD40_4	498	539	0.0062	IPR001680
SMART	SM00320	WD40_4	221	260	6.3E-8	IPR001680
SMART	SM00320	WD40_4	408	447	4.5	IPR001680
SMART	SM00320	WD40_4	367	406	4.5E-10	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	333	365	9.862871	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	516	539	9.104886	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	373	407	13.348998	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	228	261	11.471045	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	228	261	13.85027	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	333	373	12.112524	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	373	407	11.075592	-
PRINTS	PR00320	G protein beta WD-40 repeat signature	393	407	1.4E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	247	261	1.4E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	351	365	1.4E-6	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K20241 (WD repeat-containing protein 44)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G64610.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_022025725.1	uncharacterized WD repeat-containing protein C18H10.05 [Helianthus annuus]
Swiss-Prot	Q9R037	WD repeat-containing protein 44 OS=Rattus norvegicus OX=10116 GN=Wdr44 PE=1 SV=1
TrEMBL	A0A5N6MMY8	WD_REPEATS_REGION domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_30636 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	13	jg10272, jg14869, jg17167, jg2164, jg22490, jg24462, jg32560 ... jg33916, jg37376, jg37526, jg38300, jg39640, jg7483
Aizoaceae	Mesembryanthemum crystallinum	7	gene_12439, gene_14642, gene_16254, gene_18313, gene_23517 ... gene_25228, gene_4988
Amaranthaceae	Atriplex hortensis	7	Ah002407, Ah003957, Ah008231, Ah018577, Ah022822, Ah027133 ... Ah028264
Amaranthaceae	Beta vulgaris	6	BVRB_1g002720, BVRB_3g051500, BVRB_4g087600, BVRB_5g103590 ... BVRB_5g110220, BVRB_6g133050
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg13395, Sbi_jg15034, Sbi_jg18714, Sbi_jg24102 ... Sbi_jg31813, Sbi_jg37154, Sbi_jg3907, Sbi_jg49131, Sbi_jg52453, Sbi_jg55848, Sbi_jg57512, Sbi_jg7942
Amaranthaceae	Salicornia europaea	6	Seu_jg12094, Seu_jg25191, Seu_jg26345, Seu_jg4976 ... Seu_jg6110, Seu_jg9390
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00000614, GOSA_00006921, GOSA_00010698, GOSA_00013400 ... GOSA_00017792, GOSA_00026615
Amaranthaceae	Suaeda glauca	17	Sgl00258, Sgl01284, Sgl05311, Sgl06366, Sgl10871, Sgl10872 ... Sgl16224, Sgl16225, Sgl23056, Sgl28170, Sgl33730, Sgl39041, Sgl52307, Sgl54107, Sgl57573, Sgl57584, Sgl59434
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000001036, gene:ENSEOMG00000001787 ... gene:ENSEOMG00000004242, gene:ENSEOMG00000007389, gene:ENSEOMG00000009821, gene:ENSEOMG00000013372, gene:ENSEOMG00000024448, gene:ENSEOMG00000027643, gene:ENSEOMG00000030152, gene:ENSEOMG00000035187, gene:ENSEOMG00000042682, gene:ENSEOMG00000043753, gene:ENSEOMG00000049335
Amaranthaceae	Chenopodium quinoa	11	CQ.Regalona.r1.1AG0004840, CQ.Regalona.r1.2BG0026520 ... CQ.Regalona.r1.3AG0005530, CQ.Regalona.r1.3BG0005580, CQ.Regalona.r1.4AG0020140, CQ.Regalona.r1.4BG0020830, CQ.Regalona.r1.5AG0005200, CQ.Regalona.r1.5AG0013680, CQ.Regalona.r1.5BG0005590, CQ.Regalona.r1.5BG0014260, CQ.Regalona.r1.6AG0022410
Anacardiaceae	Pistacia vera	5	pistato.v30006060, pistato.v30110460, pistato.v30133660 ... pistato.v30160780, pistato.v30165200
Apiaceae	Apium graveolens	9	Ag10G01943, Ag10G02502, Ag11G03138, Ag11G04685, Ag3G01187 ... Ag4G02640, Ag6G01566, Ag7G02216, AgUnG00246
Arecaceae	Cocos nucifera	7	COCNU_07G006800, COCNU_07G012660, COCNU_08G006570 ... COCNU_09G006920, COCNU_10G005100, COCNU_10G010590, COCNU_15G001140
Arecaceae	Phoenix dactylifera	10	gene-LOC103695450, gene-LOC103695765, gene-LOC103696270 ... gene-LOC103696321, gene-LOC103697373, gene-LOC103707690, gene-LOC103707703, gene-LOC103716318, gene-LOC103716714, gene-LOC120108677
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.1177.V1.1, AsparagusV1_01.952.V1.1 ... AsparagusV1_04.3420.V1.1, AsparagusV1_07.2137.V1.1, AsparagusV1_09.144.V1.1
Asteraceae	Flaveria trinervia	9	Ftri12G32657, Ftri13G25869, Ftri14G06338, Ftri15G02541 ... Ftri15G09953, Ftri2G31146, Ftri3G08771, Ftri3G09758, Ftri4G31071
Brassicaceae	Arabidopsis thaliana	9	AT1G48870.1, AT1G64610.1, AT2G37670.1, AT3G15470.1 ... AT5G02430.1, AT5G24320.2, AT5G42010.1, AT5G53500.1, AT5G54200.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10003733m.g.v1.0, Thhalv10011035m.g.v1.0 ... Thhalv10011347m.g.v1.0, Thhalv10012625m.g.v1.0, Thhalv10012916m.g.v1.0, Thhalv10016206m.g.v1.0, Thhalv10020024m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g35780.v2.2, Sp2g00110.v2.2, Sp2g23000.v2.2 ... Sp3g13720.v2.2, Sp4g20040.v2.2, Sp6g15640.v2.2, Sp6g16260.v2.2, Sp7g00110.v2.2, Sp7g08760.v2.2
Brassicaceae	Brassica nigra	14	BniB01g007090.2N, BniB01g049490.2N, BniB02g031820.2N ... BniB02g032700.2N, BniB02g077220.2N, BniB04g023150.2N, BniB04g061790.2N, BniB05g031200.2N, BniB05g033360.2N, BniB06g005500.2N, BniB06g058910.2N, BniB08g000680.2N, BniB08g016130.2N, BniB08g016590.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1090, Ceq03G0621, Ceq06G1891, Ceq08G1165, Ceq09G1644
Casuarinaceae	Casuarina glauca	6	Cgl01G1267, Cgl03G0711, Cgl03G0715, Cgl06G1966, Cgl08G1195 ... Cgl09G1778
Cymodoceaceae	Cymodocea nodosa	6	gene.Cymno02g09270, gene.Cymno04g07370, gene.Cymno10g01780 ... gene.Cymno10g10360, gene.Cymno14g02420, gene.Cymno14g04870
Dunaliellaceae	Dunaliella salina	1	Dusal.0329s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	11	gene.Thate01g06360, gene.Thate02g22810, gene.Thate02g28900 ... gene.Thate02g28910, gene.Thate03g08820, gene.Thate03g09140, gene.Thate07g00810, gene.Thate07g09310, gene.Thate08g05300, gene.Thate08g17940, gene.Thate08g23260
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-2155, nbisL1-mrna-2837, nbisL1-mrna-2838 ... nbisL1-mrna-8644, nbisL1-mrna-9183
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.1240, evm.TU.LG02.844, evm.TU.LG04.672 ... evm.TU.LG05.1187, evm.TU.LG05.1645, evm.TU.LG10.1585
Plantaginaceae	Plantago ovata	8	Pov_00003208, Pov_00003341, Pov_00009066, Pov_00011306 ... Pov_00020507, Pov_00031394, Pov_00031408, Pov_00041177
Plumbaginaceae	Limonium bicolor	11	Lb0G37621, Lb1G04133, Lb1G04134, Lb2G09110, Lb2G09115 ... Lb2G09116, Lb2G12384, Lb3G21032, Lb4G24694, Lb5G27321, Lb5G27740
Poaceae	Echinochloa crus-galli	26	AH01.5070, AH02.13, AH04.564, AH05.343, AH07.2114, AH09.1956 ... AH09.2714, AH09.956, BH01.5205, BH04.597, BH05.397, BH07.2072, BH09.1029, BH09.1030, BH09.1857, BH09.2124, BH09.2955, CH04.606, CH05.454, CH07.1920, CH07.1972, CH07.2631, CH09.1160, CH09.1990, CH09.2268, Contig786.18
Poaceae	Eleusine coracana subsp. coracana	16	gene-QOZ80_2AG0138710, gene-QOZ80_2BG0188730 ... gene-QOZ80_2BG0194380, gene-QOZ80_3AG0231020, gene-QOZ80_3BG0296810, gene-QOZ80_4AG0299320, gene-QOZ80_4AG0307090, gene-QOZ80_4AG0309700, gene-QOZ80_4AG0323940, gene-QOZ80_4BG0330010, gene-QOZ80_4BG0338130, gene-QOZ80_4BG0340880, gene-QOZ80_5AG0383670, gene-QOZ80_5BG0430490, gene-QOZ80_9AG0670310, gene-QOZ80_9BG0693680
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.2HG0167400.1, HORVU.MOREX.r3.2HG0183710.1 ... HORVU.MOREX.r3.2HG0187610.1, HORVU.MOREX.r3.2HG0209640.1, HORVU.MOREX.r3.4HG0347190.1, HORVU.MOREX.r3.4HG0414210.1, HORVU.MOREX.r3.5HG0455820.1, HORVU.MOREX.r3.6HG0598100.1
Poaceae	Lolium multiflorum	9	gene-QYE76_016449, gene-QYE76_023915, gene-QYE76_042997 ... gene-QYE76_043928, gene-QYE76_045629, gene-QYE76_047560, gene-QYE76_064505, gene-QYE76_071461, gene-QYE76_071482
Poaceae	Oryza coarctata	17	Oco03G011920, Oco03G016300, Oco04G012350, Oco04G017040 ... Oco05G000910, Oco06G000880, Oco07G005460, Oco07G011250, Oco07G013390, Oco07G019330, Oco08G005520, Oco08G010990, Oco08G012940, Oco08G018600, Oco21G002660, Oco22G003430, Oco23G003030
Poaceae	Oryza sativa	11	LOC_Os02g33630.1, LOC_Os02g42590.1, LOC_Os02g53890.1 ... LOC_Os03g02440.1, LOC_Os04g34080.1, LOC_Os04g44700.1, LOC_Os04g48010.2, LOC_Os04g58180.1, LOC_Os07g49090.1, LOC_Os11g08400.1, LOC_Os12g07874.1
Poaceae	Paspalum vaginatum	9	gene-BS78_01G507000, gene-BS78_04G155800 ... gene-BS78_04G207600, gene-BS78_05G094500, gene-BS78_06G090100, gene-BS78_06G167600, gene-BS78_06G203100, gene-BS78_06G284400, gene-BS78_08G049500
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0100720, Pt_Chr0100807, Pt_Chr0204064, Pt_Chr0207544 ... Pt_Chr0300093, Pt_Chr0301626, Pt_Chr0301976, Pt_Chr0302735, Pt_Chr0302776, Pt_Chr0307125, Pt_Chr0307357
Poaceae	Sporobolus alterniflorus	36	Chr01G025530, Chr01G038830, Chr04G006460, Chr04G023380 ... Chr06G025220, Chr07G005170, Chr07G020050, Chr07G020060, Chr09G014880, Chr09G025070, Chr11G013150, Chr12G000550, Chr13G006530, Chr13G010890, Chr19G012890, Chr23G000820, Chr23G006320, Chr23G008170, Chr23G013370, Chr23G016690, Chr23G016700, Chr25G000630, Chr25G005250, Chr25G006710, Chr25G011500, Chr26G003130, Chr26G006320, Chr26G011540, Chr26G013180, Chr26G018470, Chr27G003010, Chr30G000670, Chr30G005110, Chr30G006610, Chr30G011120, Chr31G002050
Poaceae	Thinopyrum elongatum	8	Tel2E01G528200, Tel2E01G644100, Tel2E01G687700 ... Tel2E01G963600, Tel4E01G157400, Tel4E01G589100, Tel5E01G219700, Tel6E01G448000
Poaceae	Triticum dicoccoides	16	gene_TRIDC2AG043200, gene_TRIDC2AG054030 ... gene_TRIDC2AG058080, gene_TRIDC2AG077380, gene_TRIDC2BG046050, gene_TRIDC2BG056760, gene_TRIDC2BG061000, gene_TRIDC2BG085830, gene_TRIDC4AG034370, gene_TRIDC4BG015440, gene_TRIDC4BG060140, gene_TRIDC5AG018770, gene_TRIDC5AG074880, gene_TRIDC5BG020990, gene_TRIDC6AG036290, gene_TRIDC6BG043140
Poaceae	Triticum aestivum	24	TraesCS2A02G298200.1, TraesCS2A02G373500.2 ... TraesCS2A02G402000.1, TraesCS2A02G591500.1, TraesCS2B02G314700.1, TraesCS2B02G390600.2, TraesCS2B02G420100.1, TraesCS2B02G592200.1, TraesCS2D02G296300.1, TraesCS2D02G369700.1, TraesCS2D02G399400.1, TraesCS2D02G562800.1, TraesCS4A02G221200.1, TraesCS4B02G099600.1, TraesCS4B02G359300.1, TraesCS4D02G095600.1, TraesCS4D02G352900.1, TraesCS5A02G114500.1, TraesCS5A02G528200.1, TraesCS5B02G120700.1, TraesCS5D02G124900.1, TraesCS6A02G235200.1, TraesCS6B02G263900.1, TraesCS6D02G217900.1
Poaceae	Zea mays	20	Zm00001eb001040_P001, Zm00001eb015580_P001 ... Zm00001eb055480_P001, Zm00001eb066110_P001, Zm00001eb073740_P001, Zm00001eb075850_P001, Zm00001eb083450_P002, Zm00001eb099060_P001, Zm00001eb125800_P001, Zm00001eb185690_P003, Zm00001eb201360_P003, Zm00001eb243200_P003, Zm00001eb248440_P005, Zm00001eb297920_P001, Zm00001eb333770_P001, Zm00001eb341300_P001, Zm00001eb408270_P002, Zm00001eb422140_P001, Zm00001eb427140_P002, Zm00001eb433820_P003
Poaceae	Zoysia japonica	13	nbis-gene-15000, nbis-gene-22580, nbis-gene-27229 ... nbis-gene-3158, nbis-gene-37148, nbis-gene-4743, nbis-gene-5347, nbis-gene-5584, nbis-gene-56367, nbis-gene-6202, nbis-gene-7703, nbis-gene-8164, nbis-gene-9369
Poaceae	Zoysia macrostachya	14	Zma_g13974, Zma_g16434, Zma_g18527, Zma_g20098, Zma_g20255 ... Zma_g21021, Zma_g21260, Zma_g21668, Zma_g21802, Zma_g22231, Zma_g2245, Zma_g24833, Zma_g24835, Zma_g4583
Portulacaceae	Portulaca oleracea	19	evm.TU.LG01.1573, evm.TU.LG01.2104, evm.TU.LG02.692 ... evm.TU.LG03.2451, evm.TU.LG04.2128, evm.TU.LG04.2673, evm.TU.LG04.3575, evm.TU.LG06.188, evm.TU.LG07.86, evm.TU.LG08.298, evm.TU.LG09.1858, evm.TU.LG11.1700, evm.TU.LG14.1277, evm.TU.LG14.826, evm.TU.LG16.9, evm.TU.LG17.1497, evm.TU.LG19.1301, evm.TU.LG22.976, evm.TU.LG24.1295
Posidoniaceae	Posidonia oceanica	7	gene.Posoc01g19640, gene.Posoc02g10200, gene.Posoc02g14790 ... gene.Posoc04g15870, gene.Posoc05g21180, gene.Posoc06g04160, gene.Posoc06g11380
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_14_RagTag.57, evm.TU.Scaffold_16_RagTag.47 ... evm.TU.Scaffold_17_RagTag.549, evm.TU.Scaffold_1_RagTag.1670, evm.TU.Scaffold_1_RagTag.638, evm.TU.Scaffold_2_RagTag.754, evm.TU.Scaffold_3_RagTag.1003
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-1093, nbisL1-mrna-11200, nbisL1-mrna-22128 ... nbisL1-mrna-22211, nbisL1-mrna-22296, nbisL1-mrna-7441
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-15092, nbisL1-mrna-3568, nbisL1-mrna-4340 ... nbisL1-mrna-901, nbisL1-mrna-9593, nbisL1-mrna-9690
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-10598, nbisL1-mrna-20437, nbisL1-mrna-2279 ... nbisL1-mrna-3810, nbisL1-mrna-5683, nbisL1-mrna-8661
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000006l.123, evm.TU.utg000007l.362 ... evm.TU.utg000009l.1097, evm.TU.utg000012l.421, evm.TU.utg000016l.614, evm.TU.utg000019l.638, evm.TU.utg000022l.468
Rhizophoraceae	Kandelia obovata	6	Maker00002205, Maker00005396, Maker00011013, Maker00013286 ... Maker00014234, Maker00018398
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-12700, nbisL1-mrna-15023, nbisL1-mrna-15939 ... nbisL1-mrna-3608, nbisL1-mrna-8376
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-11034, nbisL1-mrna-1704, nbisL1-mrna-5960 ... nbisL1-mrna-6800, nbisL1-mrna-7108, nbisL1-mrna-785
Salicaceae	Populus euphratica	10	populus_peu00483, populus_peu03735, populus_peu11286 ... populus_peu13607, populus_peu17545, populus_peu22771, populus_peu27991, populus_peu29443, populus_peu31529, populus_peu34581
Solanaceae	Lycium barbarum	9	gene-LOC132605333, gene-LOC132609951, gene-LOC132614441 ... gene-LOC132617149, gene-LOC132628725, gene-LOC132630307, gene-LOC132632112, gene-LOC132634732, gene-LOC132639722
Solanaceae	Solanum chilense	9	SOLCI001724000, SOLCI002800100, SOLCI002997800 ... SOLCI003126600, SOLCI004764200, SOLCI005045900, SOLCI006682600, SOLCI006780600, SOLCI007204100
Solanaceae	Solanum pennellii	9	gene-LOC107002403, gene-LOC107002745, gene-LOC107005033 ... gene-LOC107015292, gene-LOC107021101, gene-LOC107026291, gene-LOC107026666, gene-LOC107028880, gene-LOC107029852
Tamaricaceae	Reaumuria soongarica	5	STRG.3255_chr01_+, STRG.6147_chr04_+, gene_10306, gene_5420 ... gene_6814
Tamaricaceae	Tamarix chinensis	19	TC02G1733, TC02G2500, TC03G0756, TC03G2903, TC04G0445 ... TC04G0492, TC04G0494, TC04G1790, TC04G2856, TC05G1121, TC06G2660, TC07G0249, TC07G0488, TC07G0660, TC07G1139, TC08G1162, TC08G1310, TC09G2349, TC11G0521
Zosteraceae	Zostera marina	10	Zosma01g21370.v3.1, Zosma01g35910.v3.1, Zosma01g40080.v3.1 ... Zosma02g01650.v3.1, Zosma02g01690.v3.1, Zosma02g01720.v3.1, Zosma03g28430.v3.1, Zosma05g24020.v3.1, Zosma05g33920.v3.1, Zosma06g29090.v3.1