Basic Information
Locus ID:
Ftri13G24913
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 103591160 | 103593592 | - | Ftri13G24913 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 45,144.62 Da | 44.92 | 80.10 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 352 | 387 | 0.0071 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 287 | 0.26 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 331 | 8.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 244 | 0.025 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 16 | 86 | 2.1E-23 | IPR022052 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 103 | 389 | 1.15E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 400 | 3.8E-128 | IPR015943 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 0.041 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 331 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 388 | 0.054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 143 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 287 | 0.0066 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 195 | 6.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 298 | 333 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 298 | 333 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 162 | 197 | 8.834696 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 162 | 197 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 211 | 253 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 355 | 389 | 8.503359 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 318 | 332 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 182 | 196 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 274 | 288 | 1.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 318 | 332 | 1.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 182 | 196 | 1.7E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_022021257.1 | WD-40 repeat-containing protein MSI3 [Helianthus annuus] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251RMX4 | Putative transducin family protein / WD-40 repeat family protein OS=Helianthus annuus OX=4232 GN=MSI3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology