Basic Information
Locus ID:
Ftri13G23436
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 100164148 | 100165415 | - | Ftri13G23436 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.42 | 17,983.81 Da | 38.93 | 81.53 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 92 | 154 | 3.79141E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 90 | 153 | 2.3E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 15 | 77 | 3.0E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 8 | 155 | 1.73E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 81 | 159 | 2.8E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 80 | 1.5E-22 | - |
| SMART | SM00054 | efh_1 | 16 | 44 | 6.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 52 | 80 | 0.0043 | IPR002048 |
| SMART | SM00054 | efh_1 | 92 | 120 | 1.5E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 128 | 156 | 3.5E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 12 | 47 | 14.094975 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 88 | 123 | 15.573431 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 124 | 159 | 13.174425 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 48 | 83 | 11.138062 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 61 | 73 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 101 | 113 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 25 | 37 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 137 | 149 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_022022732.1 | probable calcium-binding protein CML11 [Helianthus annuus] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251RLY3 | Putative EF hand calcium-binding protein family OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0538101 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology