Basic Information
Locus ID:
Ftri13G16792
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 97481925 | 97487589 | - | Ftri13G16792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 91,699.89 Da | 42.15 | 80.86 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06337 | DUSP domain | 42 | 146 | 1.9E-23 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 321 | 811 | 9.1E-52 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 318 | 811 | 3.53E-75 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 16 | 146 | 3.01E-28 | IPR035927 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 719 | 815 | 1.0E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 159 | 242 | 2.6E-11 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 7 | 158 | 8.2E-37 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 304 | 514 | 2.3E-70 | - |
| SMART | SM00695 | dusp | 38 | 149 | 2.3E-28 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 320 | 815 | 38.272179 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 19 | 146 | 19.490223 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 321 | 336 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_022022312.1 | ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Helianthus annuus] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6MPE3 | Ubiquitin carboxyl-terminal hydrolase OS=Mikania micrantha OX=192012 GN=E3N88_30621 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology