Basic Information
Locus ID:
Ftri13G15259
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
UDP-glucuronic acid decarboxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 100528763 | 100542842 | - | Ftri13G15259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 79,466.51 Da | 46.42 | 80.85 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05230 | UGD_SDR_e | 103 | 402 | 0.0 | - |
| Pfam | PF05495 | CHY zinc finger | 446 | 526 | 1.8E-20 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 628 | 686 | 5.5E-26 | IPR039512 |
| Pfam | PF16363 | GDP-mannose 4,6 dehydratase | 105 | 397 | 2.7E-57 | IPR016040 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 443 | 515 | 1.15E-15 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 517 | 574 | 9.29E-20 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 579 | 633 | 7.07E-10 | - |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 101 | 407 | 6.59E-85 | IPR036291 |
| Gene3D | G3DSA:2.20.28.10 | - | 652 | 690 | 2.7E-17 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 100 | 406 | 2.0E-98 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 576 | 645 | 1.7E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 581 | 623 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 516 | 580 | 34.956631 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 581 | 624 | 11.66311 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 439 | 514 | 23.443974 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62830.1 | NAD(P)-binding Rossmann-fold superfamily protein. encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. | 0 |
| RefSeq | XP_035842597.1 | UDP-glucuronic acid decarboxylase 2 [Helianthus annuus] | 0 |
| Q9LZI2 | UDP-glucuronic acid decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=UXS2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2U1Q0Q2 | UDP-glucuronate decarboxylase OS=Artemisia annua OX=35608 GN=CTI12_AA088730 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology