Basic Information
Locus ID:
Ftri13G14664
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
UBC3
Description:
Ubiquitin-conjugating enzyme E2, catalytic domain homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 93526499 | 93527993 | - | Ftri13G14664 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 8,769.69 Da | 70.52 | 86.23 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 1 | 70 | 2.68897E-35 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 1 | 69 | 3.9E-26 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 75 | 8.11E-30 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 77 | 3.2E-32 | IPR016135 |
| SMART | SM00212 | ubc_7 | 1 | 75 | 2.0E-4 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 75 | 31.088299 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 2 | 17 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_027192777.1 | ubiquitin-conjugating enzyme E2 2-like [Cicer arietinum] | 0 |
| P35130 | Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa OX=3879 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A096Q418 | Ubiquitin-conjugating enzyme E2 2 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d007897 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri13G14664 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g25710.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g005980.2N |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G221600 |