Basic Information
Locus ID:
Ftri13G14362
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 101072676 | 101079197 | - | Ftri13G14362 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 40,619.58 Da | 52.51 | 60.33 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 117 | 198 | 3.3E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 300 | 358 | 2.9E-26 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 252 | 295 | 1.5E-7 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 189 | 246 | 3.53E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 114 | 188 | 1.57E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 299 | 7.85E-9 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 324 | 362 | 9.6E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 314 | 3.7E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 253 | 295 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 188 | 252 | 34.232605 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 253 | 295 | 12.002429 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 110 | 186 | 25.912304 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_022021568.1 | probable E3 ubiquitin-protein ligase RZFP34 isoform X2 [Helianthus annuus] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251RMJ1 | Putative CHY-type/CTCHY-type/RING-type Zinc finger protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0539531 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology