Basic Information
Locus ID:
Ftri13G13364
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 103273128 | 103279161 | - | Ftri13G13364 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 97,551.97 Da | 41.06 | 78.78 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 401 | 457 | 1.29375E-29 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 466 | 827 | 3.7E-34 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 402 | 455 | 8.8E-10 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 393 | 455 | 1.28E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 461 | 827 | 4.29E-66 | IPR029063 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 290 | 375 | 3.1E-12 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 401 | 842 | 6.1E-224 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 68 | 238 | 2.9E-44 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 273 | 384 | 7.9E-15 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 620 | 793 | 6.1E-224 | - |
| SMART | SM00439 | BAH_4 | 134 | 253 | 6.6E-9 | IPR001025 |
| SMART | SM00298 | chromo_7 | 401 | 460 | 7.3E-10 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 470 | 824 | 1.6E-29 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 134 | 253 | 16.272808 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 402 | 455 | 12.503201 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 291 | 834 | 46.466988 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 472 | 484 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 425 | 445 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 515 | 529 | 1.5E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 292 | 308 | 1.5E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 561 | 574 | 1.5E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 395 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_022020864.1 | DNA (cytosine-5)-methyltransferase CMT3 isoform X1 [Helianthus annuus] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251RMR8 | Putative C-5 cytosine methyltransferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0543611 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology