Basic Information
Locus ID:
Ftri13G11884
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 102403648 | 102407540 | + | Ftri13G11884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 65,048.50 Da | 53.58 | 92.26 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 259 | 551 | 3.61421E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 515 | 551 | 1.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 339 | 0.0099 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 469 | 508 | 0.034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 344 | 381 | 0.0051 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 293 | 8.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 252 | 551 | 4.88E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 251 | 517 | 5.9E-60 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 518 | 578 | 1.2E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 512 | 552 | 5.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 381 | 7.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 423 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 339 | 8.3E-7 | IPR001680 |
| SMART | SM00668 | ctlh | 90 | 147 | 0.005 | IPR006595 |
| SMART | SM00320 | WD40_4 | 425 | 463 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 509 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 294 | 7.3E-7 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 97 | 147 | 9.293 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 307 | 344 | 10.891048 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 519 | 561 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 307 | 348 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 296 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 360 | 383 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 296 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 57 | 89 | 8.01072 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 519 | 554 | 11.286501 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 495 | 518 | 8.637032 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 281 | 295 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 368 | 382 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_022025139.1 | WD repeat-containing protein 26 homolog [Helianthus annuus] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251RRU3 | Putative transducin family protein / WD-40 repeat family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0541441 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology