Basic Information
Locus ID:
Ftri13G09685
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
BRH1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 96955064 | 96955843 | - | Ftri13G09685 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 19,066.58 Da | 56.45 | 92.16 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 88 | 132 | 1.78397E-15 | - |
| Pfam | PF13639 | Ring finger domain | 88 | 132 | 5.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 74 | 138 | 2.14E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 138 | 2.2E-19 | IPR013083 |
| SMART | SM00744 | ringv_2 | 88 | 132 | 0.0092 | IPR011016 |
| SMART | SM00184 | ring_2 | 89 | 131 | 2.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 89 | 132 | 12.681067 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_024986296.1 | E3 ubiquitin-protein ligase RHA1B-like [Cynara cardunculus var. scolymus] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A124SBA3 | Zinc finger, RING/FYVE/PHD-type OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_007880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology