Basic Information
Locus ID:
Ftri13G09438
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 99530536 | 99535870 | + | Ftri13G09438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 111,961.55 Da | 44.87 | 72.07 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 849 | 891 | 2.1411E-4 | IPR002999 |
| Pfam | PF09465 | Lamin-B receptor of TUDOR domain | 849 | 891 | 9.3E-6 | IPR019023 |
| SUPERFAMILY | SSF48371 | ARM repeat | 32 | 270 | 4.25E-9 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 846 | 889 | 2.59E-6 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 842 | 896 | 9.2E-13 | - |
| SMART | SM00333 | TUDOR_7 | 844 | 902 | 0.0079 | IPR002999 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 1005 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 836 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 916 | 1010 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 836 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 927 | 959 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 412 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_035842532.1 | protein starmaker [Helianthus annuus] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6MMK0 | Tudor domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_30769 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology