Basic Information
Locus ID:
Ftri13G03933
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 102318686 | 102324460 | + | Ftri13G03933 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 85,631.15 Da | 42.50 | 86.43 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 247 | 5.76384E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 130 | 1.1E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 616 | 774 | 6.6E-43 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 172 | 2.7E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 10 | 45 | 0.0038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 53 | 88 | 1.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 249 | 6.96E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 343 | 1.8E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 2.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 240 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 1.3E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 4.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 46 | 0.0021 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 14.239212 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 11.602863 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 90 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 15.420926 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 55 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 18.395145 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 14.719144 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 75 | 89 | 1.4E-6 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 2 | 777 | 19.096426 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 362 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_022025184.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Helianthus annuus] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251RMP6 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0541111 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology