Basic Information
Locus ID:
Ftri13G03931
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 80765707 | 80766569 | + | Ftri13G03931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 29,630.60 Da | 40.62 | 101.16 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 24 | 274 | 2.46338E-76 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 45 | 250 | 3.5E-48 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 3 | 257 | 2.4E-79 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 1 | 276 | 8.7E-94 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 62 | 78 | - | IPR033749 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 194 | 206 | - | IPR033749 |
| Coils | Coil | Coil | 232 | 262 | - | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 3 | 274 | 0.0 | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 3 | 274 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_021998516.1 | geranylgeranyl pyrophosphate synthase, chloroplastic [Helianthus annuus] | 0 |
| Q42698 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus OX=4058 GN=GGPS1 PE=3 SV=1 | 0 | |
| TrEMBL | Q9FV47 | GGDP synthase OS=Tagetes erecta OX=13708 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology