Basic Information
Locus ID:
Ftri12G32657
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 230711 | 234173 | - | Ftri12G32657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 105,093.63 Da | 45.77 | 65.06 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 632 | 669 | 7.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 496 | 527 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 591 | 627 | 5.2E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 490 | 798 | 9.97E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 479 | 827 | 8.4E-52 | IPR015943 |
| SMART | SM00320 | WD40_4 | 489 | 528 | 3.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 589 | 627 | 1.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 713 | 753 | 0.48 | IPR001680 |
| SMART | SM00320 | WD40_4 | 754 | 795 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 630 | 669 | 4.2E-10 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 636 | 669 | 10.258324 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 496 | 530 | 11.128319 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 636 | 669 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 596 | 636 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 596 | 630 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 496 | 530 | 13.415834 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 614 | 628 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 515 | 529 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 515 | 529 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 656 | 670 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 614 | 628 | 1.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 882 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 472 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_035843300.1 | WD repeat-containing protein 44 [Helianthus annuus] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251UM98 | Putative apoptotic protease-activating factor 1 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0136911 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology