Basic Information
Locus ID:
Ftri12G31744
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 115527635 | 115529608 | - | Ftri12G31744 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 49,455.84 Da | 30.87 | 75.50 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 148 | 179 | 0.0056 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 351 | 3.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 279 | 311 | 2.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 143 | 440 | 3.52E-44 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 4 | 74 | 2.4E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 140 | 249 | 3.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 444 | 1.0E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 274 | 311 | 4.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 357 | 398 | 88.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 182 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 438 | 2.6 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 35 | 60 | 1.7E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 314 | 351 | 1.9E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 191 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 281 | 314 | 10.838322 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 35 | 61 | 13.196945 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 321 | 351 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 281 | 320 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 150 | 182 | 9.625601 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 321 | 360 | 10.775796 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 298 | 312 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 169 | 183 | 4.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 298 | 312 | 4.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 338 | 352 | 4.6E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_035842336.1 | zinc finger CCCH domain-containing protein 48-like isoform X4 [Helianthus annuus] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2U1NWU0 | C3H1-type domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA221290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology