Basic Information
Locus ID:
Ftri12G31397
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 4162664 | 4172699 | - | Ftri12G31397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 96,137.90 Da | 39.78 | 84.29 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 4 | 198 | 1.70458E-92 | - |
| CDD | cd18794 | SF2_C_RecQ | 199 | 334 | 1.65561E-53 | - |
| Pfam | PF16124 | RecQ zinc-binding | 338 | 399 | 3.0E-14 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 220 | 324 | 5.0E-21 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 537 | 603 | 7.4E-15 | IPR002121 |
| Pfam | PF09382 | RQC domain | 402 | 499 | 3.6E-21 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 18 | 177 | 1.1E-19 | IPR011545 |
| Pfam | PF14493 | Helix-turn-helix domain | 645 | 738 | 3.0E-17 | IPR029491 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 397 | 501 | 2.04E-24 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 531 | 609 | 1.2E-16 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 55 | 339 | 2.5E-56 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 401 | 518 | 4.3E-30 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 532 | 613 | 3.4E-17 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 197 | 5.9E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 199 | 400 | 1.5E-58 | IPR027417 |
| SMART | SM00490 | helicmild6 | 244 | 325 | 5.6E-28 | IPR001650 |
| SMART | SM00341 | hrdc7 | 533 | 613 | 1.9E-4 | IPR002121 |
| SMART | SM00956 | RQC_2 | 406 | 510 | 3.6E-21 | IPR018982 |
| SMART | SM00487 | ultradead3 | 12 | 207 | 6.9E-28 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 6 | 458 | 4.4E-149 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 24 | 191 | 23.467415 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 219 | 366 | 19.088436 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 533 | 613 | 18.985546 | IPR002121 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021975105.1 | ATP-dependent DNA helicase RecQ [Helianthus annuus] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A251VN09 | ATP-dependent DNA helicase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0013541 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology