Basic Information
Locus ID:
Ftri12G29827
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
MSH1
Description:
DNA mismatch repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 118982696 | 118993194 | + | Ftri12G29827 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 126,185.19 Da | 39.05 | 93.52 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03243 | ABC_MutS_homologs | 751 | 934 | 6.44575E-70 | - |
| Pfam | PF01624 | MutS domain I | 130 | 222 | 2.5E-8 | IPR007695 |
| Pfam | PF01541 | GIY-YIG catalytic domain | 1039 | 1075 | 8.7E-5 | IPR000305 |
| Pfam | PF00488 | MutS domain V | 765 | 947 | 1.7E-41 | IPR000432 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 751 | 947 | 1.72E-34 | IPR027417 |
| SUPERFAMILY | SSF82771 | GIY-YIG endonuclease | 1038 | 1101 | 4.18E-7 | IPR035901 |
| SUPERFAMILY | SSF55271 | DNA repair protein MutS, domain I | 121 | 228 | 1.96E-17 | IPR016151 |
| Gene3D | G3DSA:3.40.50.300 | - | 726 | 1011 | 2.7E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.1170.10 | DNA repair protein MutS, domain I | 70 | 225 | 4.8E-16 | IPR016151 |
| SMART | SM00534 | mutATP5 | 761 | 947 | 2.7E-49 | IPR000432 |
| ProSitePatterns | PS00486 | DNA mismatch repair proteins mutS family signature. | 842 | 858 | - | IPR000432 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24320.1 | MUTL protein homolog 1. Promotes re-arrangements of mitochondrial genome. Mutations affects mitochondrial gene expression, and impairs mitochondrial function. Dual targeting of the protein to mitochondria and chloroplasts caused by alternative translation initiation. | 0 |
| RefSeq | XP_021981998.1 | DNA mismatch repair protein MSH1, mitochondrial [Helianthus annuus] | 0 |
| Q84LK0 | DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MSH1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251VQK1 | Putative GIY-YIG nuclease superfamily OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0023051 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27726 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21425 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010418 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g089360, BVRB_9g219000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11637, Sbi_jg46762 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20891 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005122 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl56345, Sgl56346, Sgl60571, Sgl61179, Sgl61875, Sgl61876 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000016398, gene:ENSEOMG00000017639 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0009140, CQ.Regalona.r1.9AG0015380 |
| Apiaceae | Apium graveolens | 1 | Ag8G01444 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G009240 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721294 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1864.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G29827, Ftri6G09752 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24320.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002376m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g22130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g036840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1231 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1296, Cgl07G1307 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03240 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0021s00015.v1.0, Dusal.0461s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g07310 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.685 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025386 |
| Plumbaginaceae | Limonium bicolor | 7 | Lb3G17568, Lb3G18607, Lb4G26343, Lb6G30570, Lb6G30572 ... |
| Poaceae | Echinochloa crus-galli | 2 | BH09.1691, CH09.1814 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0311380, gene-QOZ80_4BG0342630 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0180240.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045001 |
| Poaceae | Oryza coarctata | 2 | Oco07G010210, Oco08G010020 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g42784.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G153400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301958, Pt_Chr0302177 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G009240, Chr26G010450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G630700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG052470, gene_TRIDC2BG055520 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G362100.1, TraesCS2B02G379900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb426210_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37026 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20013 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1808, evm.TU.LG15.1361 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.919 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15760 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21119 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-788 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.575 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007395 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15188 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4314 |
| Salicaceae | Populus euphratica | 1 | populus_peu21608 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609632 |
| Solanaceae | Solanum chilense | 1 | SOLCI000596500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031051 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10166 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2285 |
| Zosteraceae | Zostera marina | 1 | Zosma05g18590.v3.1 |