Basic Information
Locus ID:
Ftri12G29425
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Glutelin type-A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 2434007 | 2436837 | - | Ftri12G29425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 37,284.46 Da | 29.51 | 92.09 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 186 | 340 | 2.3758E-81 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 160 | 4.95827E-57 | - |
| Pfam | PF00190 | Cupin | 184 | 326 | 7.5E-24 | IPR006045 |
| Pfam | PF00190 | Cupin | 11 | 143 | 3.5E-26 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 18 | 332 | 6.26E-49 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 9 | 166 | 2.7E-27 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 183 | 344 | 7.0E-52 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 183 | 327 | 4.4E-19 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 145 | 1.5E-23 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 304 | 321 | 1.1E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 246 | 262 | 1.1E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 282 | 300 | 1.1E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 264 | 279 | 1.1E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 199 | 219 | 1.1E-14 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_021972653.1 | 12S seed storage globulin 1 [Helianthus annuus] | 0 |
| P07728 | Glutelin type-A 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251VMR6 | Putative rmlC-like cupins superfamily protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0010021 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology