Basic Information
Locus ID:
Ftri12G27833
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
TIR1
Description:
Protein TRANSPORT INHIBITOR RESPONSE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 12060504 | 12065161 | + | Ftri12G27833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 59,048.41 Da | 51.69 | 96.38 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 6 | 52 | 9.0E-26 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 228 | 249 | 1.8 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 12 | 474 | 3.14E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 516 | 1.5E-180 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 253 | 276 | 49.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 123 | 149 | 35.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 311 | 335 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 371 | 394 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 420 | 444 | 61.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 69 | 94 | 110.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_022040476.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Helianthus annuus] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251VLI4 | Putative F-box/RNI-like superfamily protein OS=Helianthus annuus OX=4232 GN=TIR1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology