Basic Information
Locus ID:
Ftri12G27530
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 120132280 | 120150858 | - | Ftri12G27530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 56,042.55 Da | 47.70 | 56.94 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 46 | 96 | 1.57033E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 115 | 177 | 8.1E-16 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 194 | 242 | 7.7E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 244 | 9.64E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 127 | 5.44E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 184 | 1.94E-13 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 467 | 494 | 4.08E-6 | IPR036443 |
| Gene3D | G3DSA:2.30.30.380 | - | 464 | 494 | 1.9E-7 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 173 | 428 | 2.0E-84 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 129 | 1.8E-16 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 115 | 177 | 2.1E-25 | IPR002867 |
| SMART | SM00547 | zf_4 | 469 | 493 | 1.4E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 190 | 251 | 0.022 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 46 | 93 | 9.317383 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 466 | 494 | 8.546706 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 42 | 255 | 51.479248 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 471 | 490 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 464 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_022018095.1 | probable E3 ubiquitin-protein ligase ARI8 [Helianthus annuus] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251RW84 | RBR-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g0502621 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology