Basic Information
Locus ID:
Ftri12G25544
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 2807490 | 2811310 | + | Ftri12G25544 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 34,850.17 Da | 48.82 | 71.89 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 15 | 186 | 1.7E-78 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 111 | 184 | 4.1E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 4 | 110 | 1.3E-43 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 302 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_022010422.1 | ubiquitin fusion degradation protein 1 homolog [Helianthus annuus] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251VCH1 | Putative ubiquitin fusion degradation UFD1 family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0033161 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology