Basic Information
Locus ID:
Ftri12G23933
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 5832753 | 5841860 | + | Ftri12G23933 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 166,881.97 Da | 41.85 | 107.23 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1247 | 1467 | 1.3328E-115 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 313 | 598 | 7.00796E-104 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 944 | 1224 | 1.6646E-83 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 624 | 824 | 4.30285E-103 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 946 | 1133 | 4.8E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 643 | 776 | 8.9E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 321 | 578 | 8.4E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1266 | 1414 | 3.1E-30 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 943 | 1229 | 3.01E-41 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1239 | 1481 | 4.24E-67 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 620 | 846 | 5.73E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 299 | 609 | 1.2E-38 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 619 | 852 | 7.0E-71 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1233 | 1486 | 1.1E-82 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 285 | 607 | 4.5E-54 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 905 | 1230 | 1.2E-48 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1275 | 1467 | 9.4E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 651 | 832 | 1.1E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 313 | 590 | 36.35667 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1249 | 1483 | 18.100704 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 624 | 847 | 22.542458 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 946 | 1132 | 27.385864 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 749 | 763 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 882 | 919 | - | - |
| Coils | Coil | Coil | 901 | 922 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021975885.1 | ABC transporter C family member 5 [Helianthus annuus] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6ME37 | ABC-type xenobiotic transporter OS=Mikania micrantha OX=192012 GN=E3N88_33912 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology