Basic Information
Locus ID:
Ftri12G14860
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 5379788 | 5388734 | - | Ftri12G14860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 78,531.83 Da | 51.09 | 65.83 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 475 | 719 | 1.85641E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 685 | 719 | 0.025 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 542 | 663 | 1.3E-7 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 503 | 6.3E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.0E-6 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 476 | 719 | 1.05E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 445 | 573 | 3.6E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 574 | 720 | 6.5E-27 | IPR015943 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0094 | IPR006594 |
| SMART | SM00320 | WD40_4 | 602 | 640 | 1.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 562 | 599 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 680 | 719 | 3.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 465 | 503 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 559 | 0.0025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 643 | 678 | 44.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.055138 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 687 | 720 | 12.130133 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 478 | 512 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 561 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 687 | 720 | 13.014815 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 490 | 504 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 389 | - | - |
| Coils | Coil | Coil | 327 | 354 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_022026058.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Helianthus annuus] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A1Y3BYR1 | Putative transcriptional coregulator OS=Helianthus annuus OX=4232 GN=LUH PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology