Basic Information
Locus ID:
Ftri12G13606
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 121826905 | 121830056 | - | Ftri12G13606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 33,939.35 Da | 45.73 | 63.38 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 33 | 114 | 6.2E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 168 | 211 | 9.6E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 216 | 274 | 4.3E-26 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 105 | 162 | 1.44E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 216 | 2.23E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 28 | 104 | 6.15E-17 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 240 | 282 | 3.3E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 221 | 2.3E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 169 | 211 | 6.4E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 26 | 102 | 25.412897 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 104 | 168 | 34.305008 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 169 | 212 | 11.132002 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021979613.1 | E3 ubiquitin-protein ligase RZFP34 [Helianthus annuus] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251VQW1 | Putative CHY-type/CTCHY-type/RING-type Zinc finger protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0019621 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology