Basic Information
Locus ID:
Ftri12G09012
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 119683567 | 119685647 | - | Ftri12G09012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 49,887.01 Da | 44.95 | 78.22 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 101 | 418 | 1.5E-82 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 67 | 453 | 1.92E-122 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 56 | 461 | 4.9E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 341 | 362 | 3600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 374 | 395 | 8900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 312 | 333 | 0.61 | IPR006626 |
| SMART | SM00710 | pbh1 | 231 | 257 | 420.0 | IPR006626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 65 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021969624.1 | polygalacturonase At1g48100 [Helianthus annuus] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6P2A5 | Polygalacturonase At1g80170 OS=Mikania micrantha OX=192012 GN=E3N88_14288 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology