Basic Information
Locus ID:
Ftri12G01658
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 126606645 | 126637247 | + | Ftri12G01658 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 396,889.63 Da | 43.07 | 87.42 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3141 | 3288 | 4.6E-9 | IPR031645 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 2643 | 2876 | 4.2E-11 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 3 | 205 | 1.8E-22 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1347 | 1498 | 8.7E-14 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1581 | 1721 | 2.4E-10 | IPR009291 |
| SMART | SM00694 | dysfc | 2295 | 2334 | 0.0031 | IPR006614 |
| SMART | SM00233 | PH_update | 231 | 344 | 0.003 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 239 | 342 | 6.9001 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1538 | 1558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2395 | 2414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2628 | 2650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2974 | 2993 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.2 | - | 0 |
| RefSeq | XP_021987974.1 | uncharacterized protein LOC110884559 isoform X2 [Helianthus annuus] | 0 |
| Q8BX70 | Intermembrane lipid transfer protein VPS13C OS=Mus musculus OX=10090 GN=Vps13c PE=1 SV=2 | 0 | |
| TrEMBL | A0A251VTT8 | Putative vacuolar protein sorting-associated protein 62 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0031031 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology