Basic Information
Locus ID:
Ftri11G31972
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 16911067 | 16917039 | + | Ftri11G31972 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 66,093.68 Da | 46.44 | 94.17 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 24 | 63 | 2.6E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 82 | 128 | 2.9E-24 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 41 | 550 | 8.63E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 62 | 588 | 6.1E-175 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 61 | 4.1E-17 | - |
| SMART | SM00367 | LRR_CC_2 | 496 | 521 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 145 | 170 | 580.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 329 | 352 | 160.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 387 | 411 | 0.23 | IPR006553 |
| SMART | SM00256 | fbox_2 | 25 | 66 | 0.0047 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 120 | 144 | 680.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 447 | 470 | 11.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_024988909.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Cynara cardunculus var. scolymus] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2J6JSR1 | F-box domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_4X56881 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology