Basic Information
Locus ID:
Ftri11G29139
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 95706202 | 95713475 | + | Ftri11G29139 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 161,158.52 Da | 45.09 | 89.59 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1067 | 1441 | 1.84558E-114 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1113 | 1443 | 2.1E-81 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1062 | 1436 | 5.89E-96 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 101 | 510 | 2.55E-32 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1013 | 1216 | 2.7E-39 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 115 | 600 | 5.8E-48 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1326 | 1441 | 2.4E-33 | - |
| SMART | SM00119 | hect_3 | 1079 | 1443 | 4.3E-99 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1081 | 1443 | 66.736343 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 810 | 828 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 801 | 849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 829 | 849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 82 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021994628.1 | E3 ubiquitin-protein ligase UPL4 [Helianthus annuus] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5N6MAI6 | HECT-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_32997 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology