Basic Information
Locus ID:
Ftri11G28535
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 94994274 | 94995532 | - | Ftri11G28535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 44,128.27 Da | 30.98 | 101.28 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 16 | 58 | 7.60329E-19 | - |
| Pfam | PF04564 | U-box domain | 12 | 81 | 1.3E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 83 | 3.18E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 102 | 363 | 5.47E-9 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | 1.0E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 88 | 381 | 4.2E-7 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 15 | 79 | 3.0E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 11 | 86 | 32.545094 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_043611173.1 | E3 ubiquitin-protein ligase PUB23-like [Erigeron canadensis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L2M4F5 | RING-type E3 ubiquitin transferase OS=Tanacetum cinerariifolium OX=118510 GN=Tci_040884 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology