Basic Information
Locus ID:
Ftri11G27548
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 1490063 | 1493663 | + | Ftri11G27548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 44,257.10 Da | 61.34 | 70.28 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 347 | 373 | 5.8E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 313 | 337 | 1.8E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 271 | 292 | 8.6E-5 | IPR001876 |
| SUPERFAMILY | SSF48695 | Multiheme cytochromes | 268 | 355 | 7.53E-6 | IPR036280 |
| Gene3D | G3DSA:4.10.1060.10 | - | 342 | 375 | 4.2E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 261 | 296 | 5.9E-7 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 308 | 341 | 4.8E-9 | - |
| SMART | SM00547 | zf_4 | 271 | 295 | 4.0E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 347 | 371 | 3.7E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 314 | 338 | 2.1E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 345 | 374 | 9.630757 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 269 | 298 | 9.088732 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 312 | 341 | 8.97581 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 349 | 368 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 273 | 292 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 265 | - | - |
| Coils | Coil | Coil | 219 | 239 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_022023048.1 | zinc finger protein VAR3, chloroplastic [Helianthus annuus] | 0 |
| TrEMBL | A0A251RUE0 | Putative zinc finger, RanBP2-type, Multihem cytochrome OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0566621 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology