Basic Information
Locus ID:
Ftri11G24005
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 93445867 | 93455078 | - | Ftri11G24005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 67,447.37 Da | 56.18 | 57.01 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 135 | 185 | 4.36305E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 204 | 266 | 1.9E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 282 | 331 | 1.6E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 285 | 333 | 1.22E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 273 | 3.53E-13 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 564 | 591 | 1.02E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 216 | 1.73E-18 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 262 | 524 | 3.6E-83 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 218 | 2.6E-17 | IPR013083 |
| Gene3D | G3DSA:2.30.30.380 | - | 562 | 591 | 2.2E-7 | - |
| SMART | SM00647 | ibrneu5 | 204 | 266 | 1.5E-24 | IPR002867 |
| SMART | SM00547 | zf_4 | 566 | 590 | 2.7E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 279 | 340 | 0.022 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 182 | 9.523925 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 564 | 591 | 8.896765 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 131 | 344 | 51.338486 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 568 | 587 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| Coils | Coil | Coil | 465 | 485 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_022039550.1 | probable E3 ubiquitin-protein ligase ARI8 [Helianthus annuus] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251UUM5 | RBR-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0160051 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology