Basic Information
Locus ID:
Ftri11G22356
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 88011394 | 88014225 | + | Ftri11G22356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 27,436.22 Da | 79.37 | 54.15 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 123 | 187 | 3.24377E-10 | - |
| Pfam | PF12906 | RING-variant domain | 123 | 186 | 2.0E-7 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 190 | 1.21E-10 | - |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 12 | 21 | 8.63E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 196 | 6.0E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 122 | 187 | 2.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 115 | 193 | 18.345613 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 42 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_023758788.1 | uncharacterized protein LOC111907238 [Lactuca sativa] | 0 |
| TrEMBL | A0A5N6M746 | RING-CH-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_31974 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology