Basic Information
Locus ID:
Ftri11G20491
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 4102385 | 4104068 | + | Ftri11G20491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 38,770.71 Da | 40.50 | 62.51 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 32 | 92 | 6.7E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 13 | 107 | 3.39E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 25 | 100 | 2.4E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 29 | 98 | 5.1E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 28 | 102 | 11.025349 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 359 | - | - |
| Coils | Coil | Coil | 247 | 267 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_022022302.1 | binding partner of ACD11 1 [Helianthus annuus] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6PT41 | RRM domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_03997 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology