Basic Information
Locus ID:
Ftri11G17853
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 54606223 | 54607271 | - | Ftri11G17853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.67 | 14,075.09 Da | 45.04 | 87.20 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 27 | 121 | 2.8E-28 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 25 | 122 | 4.05E-31 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 9 | 124 | 3.0E-49 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 27 | 121 | 2.1E-39 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 24 | 122 | 2.5E-40 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 82 | 96 | 5.7E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 60 | 75 | 5.7E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 25 | 38 | 5.7E-14 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 23 | 122 | 18.409435 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_043609887.1 | 40S ribosomal protein S20-2-like [Erigeron canadensis] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3BX28 | 40S ribosomal protein S20 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00019143pilonHSYRG00011 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology