Basic Information
Locus ID:
Ftri11G16779
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2606320 | 2609898 | + | Ftri11G16779 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 40,240.80 Da | 46.02 | 82.67 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 140 | 189 | 2.88122E-30 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 330 | 372 | 5.3346E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 9.33994E-32 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.6E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 334 | 369 | 1.9E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 149 | 184 | 1.2E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 254 | 309 | 2.8E-22 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 251 | 315 | 2.49E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 131 | 190 | 2.64E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 82 | 1.59E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 313 | 376 | 3.89E-15 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.8E-29 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 326 | 373 | 4.5E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 245 | 310 | 1.9E-26 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 139 | 189 | 9.4E-22 | - |
| SMART | SM00727 | CBM | 252 | 295 | 7.4E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 334 | 371 | 5.0E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 8.4E-22 | IPR000626 |
| SMART | SM00165 | uba_6 | 146 | 186 | 6.0E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 377 | 2.5E-115 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.217669 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 144 | 187 | 12.281826 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 331 | 372 | 14.812021 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 360 | 375 | 3.8E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 328 | 344 | 3.8E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 345 | 359 | 3.8E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 280 | 302 | 3.8E-35 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 105 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_022025376.1 | ubiquitin receptor RAD23d [Helianthus annuus] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6PUW0 | Ubiquitin receptor RAD23 OS=Mikania micrantha OX=192012 GN=E3N88_03934 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology