Basic Information
Locus ID:
Ftri11G12016
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
BAH and coiled-coil domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 91574818 | 91579146 | - | Ftri11G12016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 24,741.80 Da | 57.22 | 58.93 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 22 | 156 | 1.56709E-57 | - |
| Pfam | PF00628 | PHD-finger | 140 | 188 | 1.0E-9 | IPR019787 |
| Pfam | PF01426 | BAH domain | 23 | 135 | 7.4E-21 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 130 | 190 | 1.82E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 202 | 6.9E-20 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 133 | 6.4E-28 | IPR043151 |
| SMART | SM00249 | PHD_3 | 140 | 187 | 1.8E-7 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 136 | 6.0E-36 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 138 | 189 | 9.071699 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 136 | 22.727106 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 141 | 186 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 215 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_021987440.1 | chromatin remodeling protein EBS [Helianthus annuus] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A251TIV5 | Putative bromo adjacent homology (BAH) domain, Zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0282071 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology