Basic Information
Locus ID:
Ftri11G06966
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 95115145 | 95134173 | - | Ftri11G06966 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 133,103.34 Da | 40.21 | 79.76 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 66 | 189 | 3.15041E-36 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 207 | 541 | 3.30668E-156 | - |
| Pfam | PF00917 | MATH domain | 71 | 190 | 4.9E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 209 | 536 | 1.9E-40 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 902 | 1111 | 5.6E-55 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 640 | 892 | 2.1E-73 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 204 | 564 | 1.04E-90 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 65 | 199 | 1.57E-39 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 62 | 205 | 1.5E-47 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 701 | 817 | 3.6E-40 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 818 | 915 | 5.1E-24 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 206 | 540 | 5.3E-82 | - |
| SMART | SM00061 | math_3 | 66 | 170 | 8.9E-18 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 64 | 189 | 34.837708 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 209 | 539 | 36.469696 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 210 | 225 | - | IPR018200 |
| Coils | Coil | Coil | 552 | 572 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021994442.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Helianthus annuus] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251TG66 | ubiquitinyl hydrolase 1 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr11g0347661 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology