Basic Information
Locus ID:
Ftri11G03457
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 88349084 | 88351131 | + | Ftri11G03457 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 41,979.49 Da | 85.08 | 61.23 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 186 | 227 | 3.2398E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 255 | 365 | 5.8E-39 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 185 | 227 | 8.5E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 8 | 37 | 8.6E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 233 | 1.72E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 233 | 6.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 186 | 226 | 2.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 227 | 12.017182 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 83 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_024974426.1 | E3 ubiquitin-protein ligase RDUF2-like [Cynara cardunculus var. scolymus] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A103Y6V9 | RING-type E3 ubiquitin transferase OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_018082 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology