Basic Information
Locus ID:
Ftri10G30016
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 19318201 | 19318743 | - | Ftri10G30016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 21,376.86 Da | 46.46 | 73.56 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 133 | 174 | 8.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 177 | 2.34E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 107 | 178 | 3.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 133 | 173 | 9.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 133 | 174 | 11.751628 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022004304.1 | probable E3 ubiquitin-protein ligase ZFP1 [Helianthus annuus] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251TBF5 | Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr11g0337551 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21106, gene_21107 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G30016, Ftri9G03016 |
| Plantaginaceae | Plantago ovata | 7 | Pov_00005098, Pov_00012293, Pov_00017219, Pov_00027224 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608268 |