Basic Information
Locus ID:
Ftri10G29210
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 94027457 | 94031262 | + | Ftri10G29210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 48,165.79 Da | 33.94 | 97.59 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 66 | 108 | 6.72195E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 267 | 305 | 5.9E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 62 | 132 | 1.4E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 184 | 223 | 2.6E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 349 | 388 | 1.8E-5 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 154 | 435 | 3.23E-52 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 54 | 138 | 5.52E-33 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 333 | 448 | 1.7E-17 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 149 | 332 | 1.0E-37 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 135 | 8.1E-33 | IPR013083 |
| SMART | SM00185 | arm_5 | 390 | 430 | 84.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 266 | 306 | 0.25 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 65 | 128 | 1.7E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 307 | 347 | 220.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 348 | 388 | 21.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 184 | 224 | 3.1E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 225 | 265 | 0.13 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 61 | 135 | 44.937923 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 195 | 237 | 12.0924 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_035832099.1 | U-box domain-containing protein 13 isoform X2 [Helianthus annuus] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SFY1 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=PUB12 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology