Basic Information
Locus ID:
Ftri10G28836
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 97789794 | 97794477 | + | Ftri10G28836 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 57,457.21 Da | 37.87 | 90.57 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 217 | 500 | 9.67597E-49 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 464 | 500 | 2.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 297 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 252 | 7.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 423 | 458 | 0.051 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 211 | 500 | 1.26E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 344 | 426 | 4.3E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 427 | 512 | 6.1E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 188 | 343 | 2.7E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 213 | 252 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 412 | 0.74 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 458 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 2.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 501 | 6.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 372 | 1.9 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 15 | 47 | 8.796783 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 468 | 500 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 220 | 253 | 10.126507 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 301 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 261 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 468 | 500 | 11.787407 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021987310.1 | WD repeat-containing protein WDS homolog [Helianthus annuus] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A251TF63 | Putative transducin family protein / WD-40 repeat family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0280271 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology