Basic Information
Locus ID:
Ftri10G26838
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 99855297 | 99859539 | + | Ftri10G26838 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 54,063.73 Da | 39.30 | 74.57 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 139 | 387 | 1.68E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 140 | 418 | 3.1E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 301 | 340 | 0.058 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 384 | 0.012 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_035834518.1 | autophagy-related protein 18a-like [Helianthus annuus] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A103XPH1 | WD40 repeat-containing protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_003474 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology