Basic Information
Locus ID:
Ftri10G25212
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
TIR1
Description:
Protein TRANSPORT INHIBITOR RESPONSE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 99689960 | 99694042 | + | Ftri10G25212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 63,340.46 Da | 43.88 | 95.34 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 1.9E-24 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 267 | 288 | 1.6 | IPR001611 |
| Pfam | PF18511 | F-box | 3 | 43 | 3.8E-19 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 36 | 2.62E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 81 | 496 | 1.14E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 555 | 7.8E-171 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 1.2E-19 | - |
| SMART | SM00367 | LRR_CC_2 | 108 | 133 | 230.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 410 | 433 | 200.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 2.9E-6 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 134 | 153 | 430.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 350 | 374 | 9.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 459 | 483 | 19.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021987578.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Helianthus annuus] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6PFF7 | F-box domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_11445 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology