Basic Information
Locus ID:
Ftri10G20462
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 96587118 | 96606059 | - | Ftri10G20462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 100,971.28 Da | 47.19 | 83.82 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 726 | 880 | 5.40399E-63 | - |
| Pfam | PF06337 | DUSP domain | 38 | 129 | 7.8E-18 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 304 | 879 | 3.3E-83 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 302 | 881 | 4.51E-106 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 15 | 128 | 4.71E-24 | IPR035927 |
| Gene3D | G3DSA:3.30.2230.10 | - | 6 | 142 | 6.6E-32 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 294 | 526 | 1.1E-62 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 143 | 231 | 9.0E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 649 | 888 | 1.4E-57 | - |
| SMART | SM00695 | dusp | 34 | 132 | 3.0E-21 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 14 | 129 | 17.555578 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 303 | 882 | 56.583088 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 824 | 841 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_021978059.1 | ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Helianthus annuus] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251U787 | Ubiquitin carboxyl-terminal hydrolase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08g0231261 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology