Basic Information
Locus ID:
Ftri10G17376
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 93424342 | 93425891 | + | Ftri10G17376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 41,951.24 Da | 87.57 | 62.30 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 188 | 232 | 7.30929E-22 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 263 | 363 | 6.4E-25 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 187 | 229 | 5.7E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 5 | 34 | 1.2E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 235 | 1.16E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 235 | 4.7E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 188 | 228 | 6.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 188 | 229 | 12.25323 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 359 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021995878.2 | E3 ubiquitin-protein ligase RDUF2 [Helianthus annuus] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6PE67 | RING-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_11073 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology