Basic Information
Locus ID:
Ftri10G16326
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 94463308 | 94463895 | + | Ftri10G16326 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 22,320.68 Da | 38.58 | 92.92 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 94 | 137 | 6.68814E-17 | - |
| Pfam | PF13639 | Ring finger domain | 94 | 137 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 143 | 5.55E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 141 | 3.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 95 | 136 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 95 | 137 | 12.607302 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43420.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022032323.1 | putative RING-H2 finger protein ATL53 [Helianthus annuus] | 0 |
| Q9LSW9 | RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6NDA3 | RING-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_22539 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag11G04249 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC108511277 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G16326 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016119 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.283 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12640 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.177 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18967 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11790 |
| Salicaceae | Populus euphratica | 1 | populus_peu02165 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643884 |
| Solanaceae | Solanum chilense | 1 | SOLCI001724800 |