Basic Information
Locus ID:
Ftri10G14779
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 99727229 | 99732323 | - | Ftri10G14779 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 24,402.53 Da | 48.51 | 67.43 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 24 | 104 | 1.5E-19 | IPR008913 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 159 | 199 | 2.9E-5 | IPR018957 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 95 | 151 | 7.06E-20 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 21 | 93 | 9.02E-18 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 204 | 2.04E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 202 | 5.7E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 159 | 201 | 8.5E-4 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 17 | 92 | 24.247616 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 159 | 202 | 10.394352 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 94 | 158 | 31.850546 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.3 | - | 0 |
| RefSeq | XP_035834513.1 | E3 ubiquitin-protein ligase MIEL1 isoform X2 [Helianthus annuus] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251TG72 | Putative zinc finger (C3HC4-type RING finger) family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0283851 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology