Basic Information
Locus ID:
Ftri10G12721
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 101736811 | 101748734 | - | Ftri10G12721 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 82,156.44 Da | 49.68 | 83.94 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 580 | 642 | 5.9E-6 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 237 | 348 | 4.2E-7 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 100 | 373 | 2.14E-19 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 580 | 642 | 2.65E-12 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 578 | 647 | 1.7E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 101 | 401 | 3.5E-26 | IPR023214 |
| SMART | SM00577 | forpap2 | 208 | 357 | 4.2E-9 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 579 | 643 | 4.0E-8 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 106 | 370 | 14.276978 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 578 | 644 | 13.057814 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 710 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_022010324.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Helianthus annuus] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5N6PFZ5 | protein-serine/threonine phosphatase OS=Mikania micrantha OX=192012 GN=E3N88_11625 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology