Basic Information
Locus ID:
Ftri10G11922
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 928557 | 936448 | - | Ftri10G11922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 72,704.17 Da | 50.37 | 80.58 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 53 | 208 | 1.07598E-27 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 87 | 156 | 2.9E-8 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 361 | 418 | 1.1E-9 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 14 | 358 | 2.6E-108 | IPR007012 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 361 | 487 | 1.35E-34 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 10 | 207 | 6.54E-50 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 209 | 358 | 8.63E-63 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 14 | 356 | 8.9E-155 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 360 | 476 | 8.3E-27 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 46 | 202 | 8.9E-155 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 4 | 621 | 1.2E-218 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 609 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_022009404.1 | nuclear poly(A) polymerase 4 isoform X1 [Helianthus annuus] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6P995 | polynucleotide adenylyltransferase OS=Mikania micrantha OX=192012 GN=E3N88_09941 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology